Is anyone aware of how "big" they are
An actual STM instrument is pretty big. About the size of, say, a mini-fridge. But the majority of that is the computer to drive the system, the readout electronics, and the enclosure (to dampen out vibrations, establish vacuum, etc.). The actual readout tip is pretty small: a nano-sized tip attached to ~100 micron 'diving board' assembly.
A related problem with STM is that it's a serial process: you have a small tip that you're scanning over a surface. This makes readout slow. However in a separate project, IBM (and others) has been working on how to solve that: the idea is to use a huge array of tips that scan the surface in parallel (IBM calls it millipede memory [ibm.com]). This makes access faster since you can basically stripe the data and read/write in parallel, and it makes random seeks faster since you don't have to move the tip array as far to get to the data you want. It increases complexity, of course, but modern nano-lithography is certainly up to the task of creating arrays of hundreds of thousands of micron-sized tips with associated electronics.
Using tip arrays would make the read/write parts more compact (as compared to having separate parallel STMs, I mean). The enclosure and driving electronics could certainly be miniaturized if there were economic incentive to do so. There's no physical barrier preventing these kinds of machines from being substantially micronized. As others have pointed out, the first magnetic disk read/write systems were rather bulk, and now hard drives can fit in your pocket. It's possible the same thing could happen here. Having said that, current data storage techniques have a huge head-start, so for something like this to catch up to the point where consumers will want to buy it may take some time.
Source: http://rss.slashdot.org/~r/Slashdot/slashdotScience/~3/dF6zBnIytKY/ibm-shrinks-bit-size-to-12-atoms
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